Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34841268_34843016_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34841268 - 34843016

Intron Length:

1749

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CCTGTGTTGATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTTAT

U12 Branch Point Sequence:

ACTGATTTATTC

Flanking Amino Acid:

ETLITWLQAQEARRNTLLKD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

76.2

39.9

Major BPS

70.9

0.52

1.2

63.7

43.9

Major PPT

64.4

0.33

60.2

40.5

Minor 5ss

34.9

-1.7

3.5

48.2

47.9

Minor BPS

45.8

-0.3

1.8

52.77

39.6

Associated Gene:

Gene:

XPOT

Ensembl Gene ID:

ENSAPLG00000008073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047804

34836599 - 34860642

24044