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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34850218_34851109_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34850218 - 34851109
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGATTT
5'SS Class:
major
3'SS Sequence:
GTTGTTTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTTGTTGACT
Flanking Amino Acid:
SVRRVFNTTLQNWQTTRFME
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
75.6
34.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78
0.63
0.9
70.2
41.3
Minor 5ss
46.1
-0.4
3.1
71.1
39.8
Minor BPS
62
0.46
2.1
82.19
39.8

Associated Gene:

Gene:
XPOT
Ensembl Gene ID:
ENSAPLG00000008073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008445
34836522 - 34860846
24325
ENSAPLT00000032105
34836522 - 34857775
21254
ENSAPLT00000025569
34836522 - 34857356
20835
ENSAPLT00000024288
34836599 - 34860642
24044
ENSAPLT00000047804
34836599 - 34860642
24044
ENSAPLT00000020507
34836522 - 34857775
21254
ENSAPLT00000041582
34837060 - 34857775
20716