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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34851534_34851711_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34851534 - 34851711
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTCTTGATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CTTTTCTTGATT
Flanking Amino Acid:
VEPQHIPTVLMAFLDHRGLR
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
77.7
31.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
82.9
0.74
0.9
77.4
35.6
Minor 5ss
46.6
-0.3
2.7
63.3
36.2
Minor BPS
76.3
0.91
1.1
86.06
34.4

Associated Gene:

Gene:
XPOT
Ensembl Gene ID:
ENSAPLG00000008073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025569
34836522 - 34857356
20835
ENSAPLT00000024288
34836599 - 34860642
24044
ENSAPLT00000047804
34836599 - 34860642
24044
ENSAPLT00000020507
34836522 - 34857775
21254
ENSAPLT00000041582
34837060 - 34857775
20716
ENSAPLT00000008445
34836522 - 34860846
24325
ENSAPLT00000032105
34836522 - 34857775
21254