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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34851807_34852548_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34851807 - 34852548
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTACTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTGTTTTACT
Flanking Amino Acid:
YLFSRFVKSLNKQMNPFIED
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80.5
0.69
0.8
79.1
34.2
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
63.9
0.52
2.1
87.77
37.8

Associated Gene:

Gene:
XPOT
Ensembl Gene ID:
ENSAPLG00000008073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025569
34836522 - 34857356
20835
ENSAPLT00000024288
34836599 - 34860642
24044
ENSAPLT00000047804
34836599 - 34860642
24044
ENSAPLT00000020507
34836522 - 34857775
21254
ENSAPLT00000041582
34837060 - 34857775
20716
ENSAPLT00000008445
34836522 - 34860846
24325
ENSAPLT00000032105
34836522 - 34857775
21254