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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34852619_34853028_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34852619 - 34853028
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TCTTCCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAA
U12 Branch Point Sequence:
TTATCTTCCATT
Flanking Amino Acid:
IQDLLELSPPENGYQALLSS
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
80.3
34.1
Major BPS
64.3
0.35
1.2
55.4
42
Major PPT
80.3
0.68
0.7
78.4
28.8
Minor 5ss
39.1
-1.2
3.1
61.3
43
Minor BPS
53.6
0.19
2
76.74
40.4

Associated Gene:

Gene:
XPOT
Ensembl Gene ID:
ENSAPLG00000008073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025569
34836522 - 34857356
20835
ENSAPLT00000024288
34836599 - 34860642
24044
ENSAPLT00000047804
34836599 - 34860642
24044
ENSAPLT00000020507
34836522 - 34857775
21254
ENSAPLT00000041582
34837060 - 34857775
20716
ENSAPLT00000008445
34836522 - 34860846
24325
ENSAPLT00000032105
34836522 - 34857775
21254