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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34853268_34853795_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34853268 - 34853795
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TTATATAAAACT
Flanking Amino Acid:
DCLNHAVGFASRTSKAFSNK
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
82.6
0.73
0.9
76
38
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
48.7
-0
2.1
74.77
41.7

Associated Gene:

Gene:
XPOT
Ensembl Gene ID:
ENSAPLG00000008073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024288
34836599 - 34860642
24044
ENSAPLT00000047804
34836599 - 34860642
24044
ENSAPLT00000020507
34836522 - 34857775
21254
ENSAPLT00000041582
34837060 - 34857775
20716
ENSAPLT00000008445
34836522 - 34860846
24325
ENSAPLT00000032105
34836522 - 34857775
21254
ENSAPLT00000025569
34836522 - 34857356
20835