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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34855892_34856967_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34855892 - 34856967
Intron Length:
1076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCATCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
ATAACCTAAATA
Flanking Amino Acid:
SGMSEVIANQGETFQKYLKF
Intron Amino Acid Position:
818

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
61.3
0.28
1
62
30.6
Major PPT
71.7
0.49
0.9
66.4
34.2
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
59
0.28
1.7
67.51
38.9

Associated Gene:

Gene:
XPOT
Ensembl Gene ID:
ENSAPLG00000008073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025569
34836522 - 34857356
20835