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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34857253_34857335_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34857253 - 34857335
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGTTAT
U12 Branch Point Sequence:
GAAACGTTATCT
Flanking Amino Acid:
IILSKLVELWGGKDGPVGFA
Intron Amino Acid Position:
857

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
75.9
34.8
Major BPS
60
0.25
1.2
51.4
43.9
Major PPT
89.8
0.9
0.6
88
21.8
Minor 5ss
42.1
-0.9
3.1
51.6
45.1
Minor BPS
46.2
-0.2
2.3
63.99
45.4

Associated Gene:

Gene:
XPOT
Ensembl Gene ID:
ENSAPLG00000008073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024288
34836599 - 34860642
24044
ENSAPLT00000047804
34836599 - 34860642
24044
ENSAPLT00000020507
34836522 - 34857775
21254
ENSAPLT00000041582
34837060 - 34857775
20716
ENSAPLT00000008445
34836522 - 34860846
24325
ENSAPLT00000032105
34836522 - 34857775
21254
ENSAPLT00000025569
34836522 - 34857356
20835