About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34857452_34857961_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34857452 - 34857961
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
CATTATCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ACTAATTGAACA
Flanking Amino Acid:
FDLADAQTVLALSECAVTLK
Intron Amino Acid Position:
896

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80
0.67
0.9
72.8
36.9
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
49.5
-0
1.6
60.51
39.1

Associated Gene:

Gene:
XPOT
Ensembl Gene ID:
ENSAPLG00000008073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047804
34836599 - 34860642
24044
ENSAPLT00000024288
34836599 - 34860642
24044
ENSAPLT00000008445
34836522 - 34860846
24325