About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34858010_34860021_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34858010 - 34860021
Intron Length:
2012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTACTTATTT
Flanking Amino Acid:
VTLKTIHLKREFCQALQQPD
Intron Amino Acid Position:
912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.3
38.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.9
0.88
0.6
83.7
24.6
Minor 5ss
43.7
-0.7
2.9
50.6
46.1
Minor BPS
65.2
0.55
1.8
83.5
37.5

Associated Gene:

Gene:
XPOT
Ensembl Gene ID:
ENSAPLG00000008073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024288
34836599 - 34860642
24044