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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34869971_34870759_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34869971 - 34870759
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
AATTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTGGAATT
Flanking Amino Acid:
IVKLFAIEEETTSRHKVLVM
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.2
0.7
0.9
77.7
40.7
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
48.7
-0
2.1
71.39
40.7

Associated Gene:

Gene:
TBK1
Ensembl Gene ID:
ENSAPLG00000008445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024099
34867064 - 34886708
19645
ENSAPLT00000008827
34868763 - 34886708
17946