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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34878102_34880593_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34878102 - 34880593
Intron Length:
2492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TTTGTTTTATGT
Flanking Amino Acid:
VNIVGLIYEEVLLPKVHQRY
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
42.3
Major BPS
75.5
0.63
1
66
40.9
Major PPT
87
0.83
0.8
84.8
35.4
Minor 5ss
45.8
-0.4
2.6
60.7
44
Minor BPS
50.6
0.1
2
74.38
43.4

Associated Gene:

Gene:
TBK1
Ensembl Gene ID:
ENSAPLG00000008445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024099
34867064 - 34886708
19645
ENSAPLT00000008827
34868763 - 34886708
17946