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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34880653_34881736_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34880653 - 34881736
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTACCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTTTTTACCC
Flanking Amino Acid:
DLDGDASMAKSVTGIVCYAC
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80.1
0.68
0.9
73.6
40.9
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
65.1
0.45
1.6
74.15
36.9

Associated Gene:

Gene:
TBK1
Ensembl Gene ID:
ENSAPLG00000008445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024099
34867064 - 34886708
19645
ENSAPLT00000008827
34868763 - 34886708
17946