About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34883907_34884796_F


Intron Information:

Intron Rank:
12

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
34883907 - 34884796

Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CGT|GTAAGTATT

5'SS Class:
major

3'SS Sequence:
TGCTCTTATGTAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTCTTAT

U12 Branch Point Sequence:
TTGCTCTTATGT

Flanking Amino Acid:
ISEINTKLLRLSSSQGTIET

Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.4
0.67
1.1
83.8
34.5

Major BPS
79.1
0.72
1
69.3
38.4

Major PPT
73.8
0.54
0.9
69.8
35.7

Minor 5ss
43.7
-0.7
2.9
61.3
43

Minor BPS
52.2
0.15
1.9
72.59
44.5

Associated Gene:

Gene:
TBK1

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

34867064 - 34886708
19645

34868763 - 34886708
17946