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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34885483_34886370_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34885483 - 34886370
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCAACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCCCTTCCAACT
Flanking Amino Acid:
YNEEQIHKFDKIFYDSKGQQ
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
69.1
0.43
0.9
66.5
33.2
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
45.5
-0.2
1.8
61.49
42.7

Associated Gene:

Gene:
TBK1
Ensembl Gene ID:
ENSAPLG00000008445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008827
34868763 - 34886708
17946