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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34987412_34988696_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34987412 - 34988696
Intron Length:
1285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTAATTTTAACT
Flanking Amino Acid:
SVTDKLKMTLNSNGIYTGFI
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.7
0.65
0.8
72.8
32
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
67.4
0.62
1.3
76.79
39.9

Associated Gene:

Gene:
RASSF3
Ensembl Gene ID:
ENSAPLG00000008816
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042704
34945171 - 34990614
45444
ENSAPLT00000009177
34980779 - 34990614
9836