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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34988965_34989933_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34988965 - 34989933
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAATT
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTCATCATTT
Flanking Amino Acid:
LYKRCHKEDQVYTCKLSDRE
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
77.9
36.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
37.4
-1.4
3.5
57.1
47.2
Minor BPS
49.5
0.04
2
74.55
42.1

Associated Gene:

Gene:
RASSF3
Ensembl Gene ID:
ENSAPLG00000008816
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009177
34980779 - 34990614
9836
ENSAPLT00000042704
34945171 - 34990614
45444