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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34990050_34990421_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34990050 - 34990421
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCTAC
5'SS Class:
major
3'SS Sequence:
TCTCTCTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTCATCTCATCT
Flanking Amino Acid:
LREHETGEVMWEAFSLPELQ
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
63.7
37.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
80.5
0.69
0.9
75.6
32.9
Minor 5ss
51.4
0.05
2.4
63.7
42.5
Minor BPS
50.8
0.1
1.9
72.46
44.4

Associated Gene:

Gene:
RASSF3
Ensembl Gene ID:
ENSAPLG00000008816
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042704
34945171 - 34990614
45444
ENSAPLT00000009177
34980779 - 34990614
9836