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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35008067_35009786_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35008067 - 35009786
Intron Length:
1720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTGTCTTCAACA
Flanking Amino Acid:
LQYCEFDDREVFVEVYNLTA
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
77.5
0.62
0.9
73.9
35.5
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
71.8
0.68
1.5
79.46
37

Associated Gene:

Gene:
GNS
Ensembl Gene ID:
ENSAPLG00000008943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009337
35006649 - 35023964
17316