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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35010675_35011896_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35010675 - 35011896
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAA
U12 Branch Point Sequence:
GTCATGTTAACC
Flanking Amino Acid:
MDGMSLLPLLRGDKNVTWRS
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
66.7
0.42
1
58.1
38.5
Major PPT
71.6
0.49
0.8
64.4
36.6
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
50.4
-0
2.1
63.15
42.4

Associated Gene:

Gene:
GNS
Ensembl Gene ID:
ENSAPLG00000008943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009337
35006649 - 35023964
17316