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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35011999_35012378_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35011999 - 35012378
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTCACCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TTTTCCTCACCC
Flanking Amino Acid:
PGIKPNQTNKMLVANIDLGP
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
77.9
38.6
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
73.3
0.53
0.8
65.7
29.9
Minor 5ss
33.7
-1.9
3
41.1
45.5
Minor BPS
68.6
0.56
1.8
82.89
37.2

Associated Gene:

Gene:
GNS
Ensembl Gene ID:
ENSAPLG00000008943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009337
35006649 - 35023964
17316