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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35012483_35013007_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35012483 - 35013007
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTAATGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ACCTATTTAACT
Flanking Amino Acid:
FYTSDNGFHTGQFSLPIDKR
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.2
39.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
70.7
0.47
1
65.5
39.9
Minor 5ss
38.6
-1.3
3.4
52.7
46.4
Minor BPS
65.2
0.55
1.5
74.83
42.2

Associated Gene:

Gene:
GNS
Ensembl Gene ID:
ENSAPLG00000008943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009337
35006649 - 35023964
17316