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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35013127_35014494_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35013127 - 35014494
Intron Length:
1368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTGTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCACATCAATT
Flanking Amino Acid:
IQFLDDAYRKRWQTLLSVDD
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
100
1.24
0.5
100
0
Major PPT
77.2
0.61
0.9
72.9
37.5
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
53.6
0.19
1.9
74.38
42.4

Associated Gene:

Gene:
GNS
Ensembl Gene ID:
ENSAPLG00000008943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009337
35006649 - 35023964
17316