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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35020732_35021132_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35020732 - 35021132
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGAC
5'SS Class:
major
3'SS Sequence:
TTCTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TTCTTTTTCACA
Flanking Amino Acid:
PPGWSFWYALEKNSKYYNYT
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.2
33.9
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
90.3
0.91
0.6
86.8
24.1
Minor 5ss
39.2
-1.2
3.1
48.3
42.5
Minor BPS
62.5
0.39
1.7
73.92
38.7

Associated Gene:

Gene:
GNS
Ensembl Gene ID:
ENSAPLG00000008943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009337
35006649 - 35023964
17316