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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35022921_35023551_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35022921 - 35023551
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TATCTCTTCATC
Flanking Amino Acid:
AQMGVTFVNAYVPSALCCPS
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
83.8
0.76
0.8
75.9
38
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
57.2
0.21
1.7
68.46
37.2

Associated Gene:

Gene:
GNS
Ensembl Gene ID:
ENSAPLG00000008943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009337
35006649 - 35023964
17316