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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35044021_35050783_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35044021 - 35050783
Intron Length:
6763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGAGA
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TCACGATTATTT
Flanking Amino Acid:
APRLLCTLEPGVDTKLKFTL
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.2
60.7
45.5
Major BPS
76.8
0.67
1
66
40.9
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
36.1
-1.6
3.3
49.1
46.7
Minor BPS
42.9
-0.4
2.1
59.24
44.1

Associated Gene:

Gene:
TBC1D30
Ensembl Gene ID:
ENSAPLG00000013135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013675
35043861 - 35073201
29341