About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35051293_35053739_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35051293 - 35053739
Intron Length:
2447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTGACTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTCTGTTGACT
Flanking Amino Acid:
TGIPKEWRRKVWLTLADQYL
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78
38.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.1
0.61
1
69.6
41.2
Minor 5ss
33.7
-1.9
3
42.3
44.5
Minor BPS
55.7
0.26
2.1
78.45
37.7

Associated Gene:

Gene:
TBC1D30
Ensembl Gene ID:
ENSAPLG00000013135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041146
35024121 - 35073201
49081
ENSAPLT00000017783
35024121 - 35073201
49081
ENSAPLT00000013675
35043861 - 35073201
29341