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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35057893_35059319_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35057893 - 35059319
Intron Length:
1427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTCA
5'SS Class:
major
3'SS Sequence:
TTTTTGATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATATTTTTGATT
Flanking Amino Acid:
LQRAANRESGGGYEPPLTNV
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.6
39.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
42.7
-0.8
3.1
56.5
47.9
Minor BPS
66.5
0.6
1.1
76.82
33.6

Associated Gene:

Gene:
TBC1D30
Ensembl Gene ID:
ENSAPLG00000013135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041146
35024121 - 35073201
49081
ENSAPLT00000017783
35024121 - 35073201
49081
ENSAPLT00000013675
35043861 - 35073201
29341