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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35068477_35068650_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35068477 - 35068650
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCCCTTATGT
Flanking Amino Acid:
PAAVKSTSLSGRLGRTRDSD
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
78.3
32.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.5
0.57
1
71.7
37.9
Minor 5ss
38.9
-1.3
2.9
44.3
43.6
Minor BPS
64.7
0.54
1.9
85.49
40.8

Associated Gene:

Gene:
TBC1D30
Ensembl Gene ID:
ENSAPLG00000013135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041146
35024121 - 35073201
49081
ENSAPLT00000017783
35024121 - 35073201
49081
ENSAPLT00000013675
35043861 - 35073201
29341