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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35068791_35070487_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35068791 - 35070487
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTA
5'SS Class:
strong_major
3'SS Sequence:
CCGCTCTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTGCTTTATTC
Flanking Amino Acid:
ELQKYQKQMKDQNEEQSLGS
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.6
30.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
70
0.45
1
64.4
36.6
Minor 5ss
33.4
-1.9
3.6
46.9
48.4
Minor BPS
62.5
0.37
1.7
73.5
38.4

Associated Gene:

Gene:
TBC1D30
Ensembl Gene ID:
ENSAPLG00000013135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013675
35043861 - 35073201
29341
ENSAPLT00000041146
35024121 - 35073201
49081
ENSAPLT00000017783
35024121 - 35073201
49081