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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35070695_35072103_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35070695 - 35072103
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATAT
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAC
Flanking Amino Acid:
QQAHHVYIRADKGPVTSLLP
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
77.7
33.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89.5
0.89
0.6
87.9
22.1
Minor 5ss
45.2
-0.5
3
64.8
46.5
Minor BPS
68.8
0.57
1.3
76.65
32.7

Associated Gene:

Gene:
TBC1D30
Ensembl Gene ID:
ENSAPLG00000013135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041146
35024121 - 35073201
49081