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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35105777_35107292_F

Intron Information:

Intron Rank:
123637
Intron Class:
major
Intron Phase:
Intron Coordinates:
35105777 - 35107292
Intron Length:
1516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGAAAT
U12 Branch Point Sequence:
TTTTCTCCCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
46.7
-0.2
1.3
51
41.5
Major PPT
79.8
0.67
0.8
79.2
28
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
46.3
-0.3
2.2
66.94
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016676
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029861
35105317 - 35108031
2715