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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35118750_35122774_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35118750 - 35122774
Intron Length:
4025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTCAATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTGTTTTCAATT
Flanking Amino Acid:
SGFEGDQCEISKCHQPCRNG
Intron Amino Acid Position:
364

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.7
0.65
0.8
70.5
39.9
Minor 5ss
32.8
-2
2.7
42.4
38.3
Minor BPS
58.8
0.35
1.5
72.07
39.6

Associated Gene:

Gene:
WIF1
Ensembl Gene ID:
ENSAPLG00000012943
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013512
35115137 - 35153808
38672