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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35172032_35190550_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35172032 - 35190550
Intron Length:
18519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTGTTTTGATA
Flanking Amino Acid:
SGVAEDVGVNIKNPFSEELR
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.3
0.64
1
76.5
37.7
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
63.6
0.42
1.3
72.69
33.6

Associated Gene:

Gene:
LEMD3
Ensembl Gene ID:
ENSAPLG00000012928
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013461
35170588 - 35216670
46083