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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35190589_35192628_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35190589 - 35192628
Intron Length:
2040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTTTCTAATT
Flanking Amino Acid:
PFSEELRDIKADEISLMMNS
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.1
0.66
0.8
71.5
38.4
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
63.4
0.5
1.6
80.73
35.2

Associated Gene:

Gene:
LEMD3
Ensembl Gene ID:
ENSAPLG00000012928
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013461
35170588 - 35216670
46083