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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35192696_35199460_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35192696 - 35199460
Intron Length:
6765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
TTATTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTTTTACCA
Flanking Amino Acid:
ALHDKLAQVAGEHECGSSIQ
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.2
0.75
0.9
78.2
39.8
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
65.7
0.49
1.6
75.26
36.4

Associated Gene:

Gene:
LEMD3
Ensembl Gene ID:
ENSAPLG00000012928
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013461
35170588 - 35216670
46083