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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35199529_35201485_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35199529 - 35201485
Intron Length:
1957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TATTCACTAATG
Flanking Amino Acid:
TVQEAAAYLKNLDPEYESVL
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.7
33.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
78.9
0.65
1
75.8
38.2
Minor 5ss
42.8
-0.8
2.9
58
40.7
Minor BPS
55
0.02
2
66.96
40.4

Associated Gene:

Gene:
LEMD3
Ensembl Gene ID:
ENSAPLG00000012928
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033524
35170588 - 35216670
46083
ENSAPLT00000013461
35170588 - 35216670
46083