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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35203623_35204498_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35203623 - 35204498
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGCTT
5'SS Class:
strong_major
3'SS Sequence:
ACGGTGTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTTCTTACGG
Flanking Amino Acid:
QMYDMVVKIIDVLRSHSEAC
Intron Amino Acid Position:
650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
40.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
65.7
0.35
1
61.3
44
Minor 5ss
42.8
-0.8
3.4
64.4
47
Minor BPS
59.2
0.15
2
70.32
43.3

Associated Gene:

Gene:
LEMD3
Ensembl Gene ID:
ENSAPLG00000012928
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033524
35170588 - 35216670
46083
ENSAPLT00000013461
35170588 - 35216670
46083