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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35231877_35237117_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
35231877 - 35237117
Intron Length:
5241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGACC
5'SS Class:
major
3'SS Sequence:
CTTCCCTACTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCTAC
U12 Branch Point Sequence:
TCTTCCCTACTC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
65.6
38.3
Major BPS
48.5
-0
1.3
46.3
38.4
Major PPT
75.1
0.56
0.8
73.2
30.5
Minor 5ss
33
-1.9
3.2
40.8
39.7
Minor BPS
56.1
0.17
2
70.63
41.3

Associated Gene:

Gene:
MSRB3
Ensembl Gene ID:
ENSAPLG00000026297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028896
35231722 - 35299024
67303