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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35237245_35241421_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
35237245 - 35241421
Intron Length:
4177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGAATGG
5'SS Class:
weak_major
3'SS Sequence:
AACTTTCCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTTCCATAATG
Flanking Amino Acid:
VALRACGLPSAFRNLYHQRR
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.4
0.18
1.2
48.8
42.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.6
0.51
0.8
66.3
34.9
Minor 5ss
31.7
-2.1
3.2
39.2
46.1
Minor BPS
69.8
0.48
1.6
75.02
36.8

Associated Gene:

Gene:
MSRB3
Ensembl Gene ID:
ENSAPLG00000026297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035576
35237118 - 35298974
61857