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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35237245_35250060_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
35237245 - 35250060
Intron Length:
12816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGAATGG
5'SS Class:
weak_major
3'SS Sequence:
TCTCCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
TCTCCCATATCC
Flanking Amino Acid:
VALRACGLPSGSCRDKKDCK
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.4
0.18
1.2
48.8
42.7
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
85.6
0.8
0.7
80.2
25
Minor 5ss
31.7
-2.1
3.2
39.2
46.1
Minor BPS
53.8
0.1
1.9
68.95
42.2

Associated Gene:

Gene:
MSRB3
Ensembl Gene ID:
ENSAPLG00000026297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028896
35231722 - 35299024
67303