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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35241494_35250060_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
35241494 - 35250060
Intron Length:
8567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGACTG
5'SS Class:
major
3'SS Sequence:
TCTCCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
TCTCCCATATCC
Flanking Amino Acid:
GSSHDLKENKRSCRDKKDCK
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
65.3
40.6
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
85.6
0.8
0.7
80.2
25
Minor 5ss
31.8
-2.1
3.2
39.7
39.9
Minor BPS
53.8
0.1
1.9
68.95
42.2

Associated Gene:

Gene:
MSRB3
Ensembl Gene ID:
ENSAPLG00000026297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035576
35237118 - 35298974
61857