Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35252047_35262403_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

35252047 - 35262403

Intron Length:

10357

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTATA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATCTTTTTATTT

Flanking Amino Acid:

KCVVCGTPLFKSETKFDSNS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.8

23.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

95.8

1.03

0.5

92.1

18.3

Minor 5ss

35.6

-1.6

2.8

42.6

38.4

Minor BPS

59.2

0.37

1.5

72.97

39.1

Associated Gene:

Gene:

MSRB3

Ensembl Gene ID:

ENSAPLG00000026297

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035576

35237118 - 35298974

61857

ENSAPLT00000028896

35231722 - 35299024

67303