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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3526060_3531103_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3526060 - 3531103
Intron Length:
5044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTTTTTATT
Flanking Amino Acid:
ANGDQEQFDSDEGSSIEDAD
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.5
33.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.7
0.65
1
77.3
35.6
Minor 5ss
41
-1
3
56.7
47.6
Minor BPS
61.5
0.44
1.6
80.48
35.3

Associated Gene:

Gene:
SFMBT2
Ensembl Gene ID:
ENSAPLG00000012668
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036909
3432656 - 3531273
98618
ENSAPLT00000028565
3400206 - 3531273
131068
ENSAPLT00000013226
3418936 - 3531273
112338