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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35456537_35464085_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35456537 - 35464085
Intron Length:
7549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TTTCCCTTTACA
Flanking Amino Acid:
NKSPSKAAQKKAEATGEKRP
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.04
0.7
89.2
17.6
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
89.3
0.88
0.6
83.8
24.4
Minor 5ss
38.3
-1.3
2.9
49
47.2
Minor BPS
75.8
0.81
1.6
85.53
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028797
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041776
35452925 - 35566856
113932
ENSAPLT00000018772
35452925 - 35546906
93982