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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35546580_35566808_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35546580 - 35566808
Intron Length:
20229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATATGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATGTATTTATTT
Flanking Amino Acid:
QQVVQKKPAQEETEETSSQE
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.2
0.54
1
66.2
44.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
53.1
0.18
1.7
70.85
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028797
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041776
35452925 - 35566856
113932