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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35600912_35602372_R

Intron Information:

Intron Rank:
154423
Intron Class:
major
Intron Phase:
Intron Coordinates:
35600912 - 35602372
Intron Length:
1461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.4
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89
0.88
0.7
85
29.8
Minor 5ss
30.7
-2.2
3.4
40.4
45.8
Minor BPS
71.6
0.76
1.5
83.61
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030622
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038050
35600590 - 35602555
1966