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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35600912_35619548_R

Intron Information:

Intron Rank:
154422
Intron Class:
major
Intron Phase:
Intron Coordinates:
35600912 - 35619548
Intron Length:
18637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
33.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89
0.88
0.7
85
29.8
Minor 5ss
27.1
-2.6
3
26.1
37
Minor BPS
71.6
0.76
1.5
83.61
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030622
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039818
35597779 - 35619758
21980
ENSAPLT00000019205
35600590 - 35619758
19169