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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35634632_35635216_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35634632 - 35635216
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
CATTTGCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTCTCTTTCATT
Flanking Amino Acid:
WILIFSGFLRLFFYSETIEL
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.1
34.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
76.1
0.59
0.9
66.2
40.5
Minor 5ss
37.8
-1.4
3
42.5
44.6
Minor BPS
66.9
0.61
1.7
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014365
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014992
35634040 - 35641476
7437