About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_35635263_35635762_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
35635263 - 35635762
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTTGT
5'SS Class:
major
3'SS Sequence:
TTATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTTATT
Flanking Amino Acid:
SKRDFSKFGAGLFACLWILI
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.4
41.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.1
0.97
0.7
92.4
26
Minor 5ss
47.6
-0.2
2.5
58.3
46.4
Minor BPS
63.1
0.49
1.8
84.66
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014365
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014992
35634040 - 35641476
7437